| 质粒名称: | pComb3XSS |
|---|---|
| 出品公司: | 爱迪基因 |
| 目录编号: | 63890 |
| 存储实验室: | Carlos Barbas |
|
载体骨架基本信息 |
|
| 载体名称: | pComb3H |
| 载体抗性: | 氨苄霉素 |
| 空载体大小: | 3300 bp |
| 完整质粒大小: | 4900 bp |
| 载体修饰: | Addition of 6xHis and HA tags for detection and purification, amber stop codon upstream of geneIII to produce soluble protein by switching to a non-suppressor strain of E. coli (e.g. Top10F') |
| 载体类型: | 细菌表达；phage display |
| 高拷贝/低拷贝: | 高拷贝 |
| 生长条件: | 37 ℃ |
|
插入基因信息 |
|
| 插入基因名称: | SS Stuffer |
| 物种来源: | Synthetic |
| 插入大小: | 1600 bp |
| 基因又名: | SfiI Stuffer |
| 启动子 | lacZ |
| 标签/融合蛋白: |
6x His (C terminal on backbone)
HA tag (C terminal on backbone)
geneIII (C terminal on backbone)
|
| 克隆方法: | 限制性内切酶 |
| 5' 克隆位点: | SfiI(未破坏) |
| 3' 克隆位点: | SfiI (未破坏) |
| 5' 测序引物 | 5'-AAG ACA GCT ATC GCG ATT GCA G-3' |
| 3' 测序引物 | 5'-GCC CCC TTA TTA GCG TTT GCC ATC-3' |
|
文献引用方法 |
|
| 材料和方法部分: | pComb3XSS was a gift from Carlos Barbas (爱迪基因 plasmid # 63890) |
| 参考文献部分: | Methods for the generation of chicken monoclonal antibody fragments by phage display. Andris-Widhopf J, Rader C, Steinberger P, Fuller R, Barbas CF 3rd. J Immunol Methods. 2000 Aug 28;242(1-2):159-81. S0022175900002210 [pii] PubMed 10986398 |
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载体基本信息
载体图谱质粒图谱和多克隆位点信息
载体简介
载体序列
LOCUS pComb3XSS 4991 bp ds-DNA circular SYN 10-JAN-2018
DEFINITION 3rd generation plasmid for phage display on modified geneIII,
contains stuffer fragment.
ACCESSION .
VERSION .
KEYWORDS pComb3XSS
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4991)
AUTHORS Andris-Widhopf J, Rader C, Steinberger P, Fuller R, Barbas CF 3rd
TITLE Methods for the generation of chicken monoclonal antibody fragments
by phage display.
JOURNAL J Immunol Methods. 2000 Aug 28;242(1-2):159-81.
PUBMED 10986398
COMMENT This file is created by Vector NTI
http://www.biofeng.com/
COMMENT ORIGDB|GenBank
COMMENT VNTAUTHORNAME|biofeng.com|
COMMENT VNTNAME|pComb3XSS|
FEATURES Location/Qualifiers
source 1..4991
/organism="synthetic DNA construct"
/mol_type="other DNA"
protein_bind 109..130
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 145..175
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 183..199
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind complement(406..422)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
primer_bind complement(406..422)
/label=M13 Reverse
/note="In lacZ gene. Also called M13-rev"
primer_bind complement(419..441)
/label=M13/pUC Reverse
/note="In lacZ gene"
protein_bind 430..446
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(454..484)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 499..520
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
CDS complement(574..591)
/codon_start=1
/product="6xHis affinity tag"
/label=6xHis
/translation="HHHHHH"
CDS 1584..1907
/codon_start=1
/gene="trxA"
/product="E. coli thioredoxin"
/label=TrxA
/translation="MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE
IADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL
DANL"
CDS 1962..1979
/codon_start=1
/product="6xHis affinity tag"
/label=6xHis
/translation="HHHHHH"
CDS 1986..2012
/codon_start=1
/product="HA (human influenza hemagglutinin) epitope tag"
/label=HA
/translation="YPYDVPDYA"
rep_origin complement(2606..3061)
/direction=LEFT
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
primer_bind complement(2743..2764)
/label=F1ori-F
/note="F1 origin, forward primer"
primer_bind 2955..2974
/label=F1ori-R
/note="F1 origin, reverse primer"
promoter 3088..3192
/gene="bla"
/label=AmpR promoter
CDS 3193..4053
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=AmpR
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
primer_bind complement(3411..3430)
/label=Amp-R
/note="Ampicillin resistance gene, reverse primer"
rep_origin 4224..4812
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
primer_bind 4713..4732
/label=pBR322ori-F
/note="pBR322 origin, forward primer"
primer_bind 4966..4983
/label=L4440
/note="L4440 vector, forward primer"
ORIGIN
1 agagcgccca atacgcaaac cgcctctccc cgcgcgttgg ccgattcatt aatgcagctg
61 gcacgacagg tttcccgact ggaaagcggg cagtgagcgc aacgcaatta atgtgagtta
121 gctcactcat taggcacccc aggctttaca ctttatgctt ccggctcgta tgttgtgtgg
181 aattgtgagc ggataacaat tgaattcagg aggaatttaa aatgaaaaag acagctatcg
241 cgattgcagt ggcactggct ggtttcgcta ccgtggccca ggcggccgag ctcgccatgg
301 ctggttgggc agcgagtaat aacaatccag cggctgccgt aggcaatagg tatttcatta
361 tgactgtctc cttggcgact agctagttta gaattcgtaa tcatggtcat agctgtttcc
421 tgtgtgaaat tgttatccgc tcacaattcc acacaacata cgagccggaa gcataaagtg
481 taaagcctgg ggtgcctaat gagtgagcta actcacatta attgcgttgc gctcactgcc
541 cgctttccag tcgggaaacc tgtcgtgtta ctaatgatgg tgatggtgat ggctagtttt
601 gtcacaagat ttgggctcaa ctttcttgtc caccttggtg ttgctgggct tgtgattcac
661 gttgcagatg taggtctggg tgcccaagct gctggagggc acggtcacca cgctgctgag
721 ggagtagagt cctgaggact gtaggacagc cgggaaggtg tgcacgccgc tggtcagggc
781 gcctgagttc cacgacaccg tcgccggttc ggggaagtag tccttgacca ggcagcccag
841 ggccgctgtg cccccagagg tgctcttgga ggagggtgcc agggggaaga ccgatgggcc
901 cttggtggag gctgcggaga cggtgaccgt ggtaccagca gaaacctggc caggctccca
961 ggctcctcat ctatggtaca tccagcaggg ccactggcat cccagacagg ttcagtggca
1021 gtgggtctgg gacagacttc actctcacca tcagcagact ggagcctgaa gattttgcag
1081 tgtactactg tcagcagtat ggtggctcac cgtggttcgg ccaagggacc aaggtggaac
1141 tcaaacgaac tgtggctgca ccatctgtct tcatcttccc gccatctgat gagcagttga
1201 aatctggaac tgcctctgtt gtgtgcctgc tgaataactt ctatcccaga gaggccaaag
1261 tacagtggaa ggtggataac gccctccaat cgggtaactc ccaggagagt gtcacagagc
1321 aggacagcaa ggacagcacc tacagcctca gcagcaccct gacgctgagc aaagcagact
1381 acgagaaaca caaagtctac gcctgcgaag tcacccatca gggcctgagc ttgcccgtca
1441 caaagagctt caacagggga gagtgttagt tctagataat taattaggag gaatttaaaa
1501 tgaaatacct attgcctacg gcagccgctg gattgttatt actcgctgcc caaccagcca
1561 tggccgaggt gcagctgctc gagatgagcg ataaaattat tcacctgact gacgacagtt
1621 ttgacacgga tgtactcaaa gcggacgggg cgatcctcgt cgatttctgg gcagagtggt
1681 gcggtccgtg caaaatgatc gccccgattc tggatgaaat cgctgacgaa tatcagggca
1741 aactgaccgt tgcaaaactg aacatcgatc aaaaccctgg cactgcgccg aaatatggca
1801 tccgtggtat cccgactctg ctgctgttca aaaacggtga agtggcggca accaaagtgg
1861 gtgcactgtc taaaggtcag ttgaaagagt tcctcgacgc taacctggcg tacccgtacg
1921 acgttccgga ctacggttct actagtggcc aggccggcca gcaccatcac catcaccatg
1981 gcgcataccc gtacgacgtt ccggactacg cttcttagga gggtggtggc tctgagggtg
2041 gcggttctga gggtggcggc tctgagggag gcggttccgg tggtggctct ggttccggtg
2101 attttgatta tgaaaagatg gcaaacgcta ataagggggc tatgaccgaa aatgccgatg
2161 aaaacgtgct acagtctgac gctaaaggca aacttgattc tgtcgctact gattacggtg
2221 ctgctatcga tggtttcatt ggtgacgttt ccggccttgc taatggtaat ggtgctactg
2281 gtgattttgc tggctctaat tcccaaatgg ctcaagtcgg tgacggtgat aattcacctt
2341 taatgaataa tttccgtcaa tatttacctt ccctccctca atcggttgaa tgtcgccctt
2401 ttgtctttgg cgctggtaaa ccatatgaat tttctattga ttgtgacaaa ataaacttat
2461 tccgtggtgt ctttgcgttt cttttatatg ttgccacctt tatgtatgta ttttctacgt
2521 ttgctaacat actgcgtaat aaggagtctt aagctagcta attaatttaa gcggccgcag
2581 atctgctctc tgaggaggat ctgggaaatt gtaagcgtta atattttgtt aaaattcgcg
2641 ttaaattttt gttaaatcag ctcatttttt aaccaatagg ccgaaatcgg caaaatccct
2701 tataaatcaa aagaatagac cgagataggg ttgagtgttg ttccagtttg gaacaagagt
2761 ccactattaa agaacgtgga ctccaacgtc aaagggcgaa aaaccgtcta tcagggcgat
2821 ggcccactac gtgaaccatc accctaatca agttttttgg ggtcgaggtg ccgtaaagca
2881 ctaaatcgga accctaaagg gagcccccga tttagagctt gacggggaaa gccggcgaac
2941 gtggcgagaa aggaagggaa gaaagcgaaa ggagcgggcg ctagggcgct ggcaagtgta
3001 gcggtcacgc tgcgcgtaac caccacaccc gccgcgctta atgcgccgct acagggcgcg
3061 tcaggtggca cttttcgggg aaatgtgcgc ggaaccccta tttgtttatt tttctaaata
3121 cattcaaata tgtatccgct catgagacaa taaccctgat aaatgcttca ataatattga
3181 aaaaggaaga gtatgagtat tcaacatttc cgtgtcgccc ttattccctt ttttgcggca
3241 ttttgccttc ctgtttttgc tcacccagaa acgctggtga aagtaaaaga tgctgaagat
3301 cagttgggtg cacgagtggg ttacatcgaa ctggatctca acagcggtaa gatccttgag
3361 agttttcgcc ccgaagaacg ttttccaatg atgagcactt ttaaagttct gctatgtggc
3421 gcggtattat cccgtattga cgccgggcaa gagcaactcg gtcgccgcat acactattct
3481 cagaatgact tggttgagta ctcaccagtc acagaaaagc atcttacgga tggcatgaca
3541 gtaagagaat tatgcagtgc tgccataacc atgagtgata acactgcggc caacttactt
3601 ctgacaacga tcggaggacc gaaggagcta accgcttttt tgcacaacat gggggatcat
3661 gtaactcgcc ttgatcgttg ggaaccggag ctgaatgaag ccataccaaa cgacgagcgt
3721 gacaccacga tgcctgtagc aatggcaaca acgttgcgca aactattaac tggcgaacta
3781 cttactctag cttcccggca acaattaata gactggatgg aggcggataa agttgcagga
3841 ccacttctgc gctcggccct tccggctggc tggtttattg ctgataaatc tggagccggt
3901 gagcgtgggt ctcgcggtat cattgcagca ctggggccag atggtaagcc ctcccgtatc
3961 gtagttatct acacgacggg gagtcaggca actatggatg aacgaaatag acagatcgct
4021 gagataggtg cctcactgat taagcattgg taactgtcag accaagttta ctcatatata
4081 ctttagattg atttaaaact tcatttttaa tttaaaagga tctaggtgaa gatccttttt
4141 gataatctca tgaccaaaat cccttaacgt gagttttcgt tccactgagc gtcagacccc
4201 gtagaaaaga tcaaaggatc ttcttgagat cctttttttc tgcgcgtaat ctgctgcttg
4261 caaacaaaaa aaccaccgct accagcggtg gtttgtttgc cggatcaaga gctaccaact
4321 ctttttccga aggtaactgg cttcagcaga gcgcagatac caaatactgt ccttctagtg
4381 tagccgtagt taggccacca cttcaagaac tctgtagcac cgcctacata cctcgctctg
4441 ctaatcctgt taccagtggc tgctgccagt ggcgataagt cgtgtcttac cgggttggac
4501 tcaagacgat agttaccgga taaggcgcag cggtcgggct gaacgggggg ttcgtgcaca
4561 cagcccagct tggagcgaac gacctacacc gaactgagat acctacagcg tgagctatga
4621 gaaagcgcca cgcttcccga agggagaaag gcggacaggt atccggtaag cggcagggtc
4681 ggaacaggag agcgcacgag ggagcttcca gggggaaacg cctggtatct ttatagtcct
4741 gtcgggtttc gccacctctg acttgagcgt cgatttttgt gatgctcgtc aggggggcgg
4801 agcctatgga aaaacgccag caacgcggcc tttttacggt tcctggcctt ttgctggcct
4861 tttgctcaca tgttctttcc tgcgttatcc cctgattctg tggataaccg tattaccgcc
4921 tttgagtgag ctgataccgc tcgccgcagc cgaacgaccg agcgcagcga gtcagtgagc
4981 gaggaagcgg a
//
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